PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.285
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 247aa    MW: 28205 Da    PI: 5.886
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.285genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.91.1e-2578168190
                         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                                  +fY eYAk++GF++r+++ ++s +n  i+ r+fvCs+eg+r+ ++   +++   +r++tr gCka++++  ++ g+w vtk+
  evm.model.supercontig_9.285  78 DFYYEYAKRTGFTLRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHMLrKDRVLPPRPVTREGCKAMIRLAARDGGTWIVTKF 159
                                  6******************************************998822333449*************************** PP

                         FAR1  82 eleHnHela 90 
                                  + eHnH+l+
  evm.model.supercontig_9.285 160 VREHNHKLM 168
                                  *******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2378168IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVLHSVGTLM PETGSGNDYL DGDRISDDEA YDAFVKPEAN AHEPPGINDS GRGLSTGDYE  60
ILEPRTGMTF LSLDDARDFY YEYAKRTGFT LRTNRIRHSL KNMAIIGRDF VCSREGFRAA  120
KHMLRKDRVL PPRPVTREGC KAMIRLAARD GGTWIVTKFV REHNHKLMNN CKFPGELPIV  180
NILSEEEKDK KIQELYDELQ CERERCAAFR QQLHTILKDL EEHADFMSIR VEDIVNSLKE  240
IELDGL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443023.11e-117hypothetical protein CICLE_v10021853mg
RefseqXP_006478703.11e-117PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A067E5U01e-117A0A067E5U0_CITSI; Uncharacterized protein
TrEMBLV4T7M31e-117V4T7M3_9R
STRINGVIT_05s0102g00440.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16776811
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.16e-43FAR1 family protein